Unit 4:  Research Techniques and Considerations

Panting dogReading Recommendations:  In-text links.

Panting dogStudy Guide

 

II  Sanitation and Vermin Control
  1. Sanitation:

    Sanitation is a method used to minimize disease and other nonexperimental variables in research.  It includes not only cleaning, but proper husbandry, environmental monitoring and aseptic technique.

Handwashing is essential!

Careful facility design and construction provide a physical plant that is easy to clean, resists invasion by insects and wild rodents, and has accessible washing areas. 

The personal hygiene of animal care personnel is essential. There have been numerous cases of animal handlers bringing micro-organisms such as the influenza virus, Salmonella and the ringworm fungus into their animal facility.  Lax personal cleanliness between animal rooms may result in a pathogen moving from an infected room to an uninfected one.  Gloves, hand-washing and wearing separate masks and scrubs or lab coats in different animal rooms help to decrease the incidence of iatrogenic (human-caused) disease transmission.  Known sick animals should always be cared for last.

Standard Operating Procedures (SOP) are written protocols for performing specific tasks.  Each facility should have an SOP for sanitation procedures.  In addition, the animal care personnel must be trained to the SOP, including cleaning techniques, and must strictly adhere to it.  Food, bedding and water must be properly stored and supplied to the animals.  There should be an SOP that details these procedures.  Waste materials must be kept separately from unused food and bedding.

There are number of different procedures and methods used to achieve sanitation.  Most bacteria are vegetative--they're actively metabolizing organisms that are susceptible to many different chemicals.  Some bacteria, however, produce spores that are resistant to most chemical cleaners. 

A disinfectant is a chemical that is used to reduce micro-organisms, especially vegetative bacteria, to a "safe" level on inanimate surfaces, such as benches.  Roccal-D® spray is an example of a disinfectant.

Sanitizers are also used on inanimate surfaces, including cages, water bottles and racks.  They utilize not only a chemical disinfectant, but the removal of gross dirt prior to sanitizing and the use of hot water.  This procedure results in a substantial reduction of the number of microbes on the substrate.

Antiseptics, such as isopropyl alcohol and hydrogen peroxide, are used to decrease the survival of micro-organisms on or in body tissues.  They are generally milder than disinfectants.  Some antiseptics are also used as disinfectants, such as isopropyl alcohol that we use to swab a vial prior to aspirating out some drug and that we use to swab the animal prior to inserting a needle for an injection. 

Sterilization is a method used to kill all viruses, vegetative bacteria and bacterial spores.  It is not achieved by using a disinfectant, sanitizer or antiseptic. 

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  1. The sanitation process:

General sanitation consists of four steps.  The essential first step is to clean off all gross dirt, because proteins and fats deactivate many chemicals and a thick layer of dirt may prevent the chemical from reaching the cage surface.

The second step is to wash the cleaned cage with a detergent (soap).  Some detergents contain sanitizers.  If it does not, a separate sanitizing rinse should be used.  The final step is a hot (82° C or 180° F) water rinse to remove all chemical residues. 

Microisolator cage

The Standard Operating Procedure should always be strictly followed, and any item listed to be cleaned should be cleaned, whether it looks like it needs to be or not!  It is important that everything be scheduled for cleaning, including sinks, vents, lights, trash cans...

It is essential to correctly handle the chemicals used in sanitation.  They must be stored properly and used according to label directions  (don't assume--read the label!).  Never mix chemicals, unless you are authorized to or it is listed on the label, and know the hazards to you and the animals.  A chemical must be supplied with a "Material Safety Data Sheet" (MSDS) that details the hazards, handling precautions and method of treating toxic reaction--read it before you use the chemical!

Chlorine  (such as Clorox®) is an inexpensive sanitizer that produces an excellent kill of bacteria and viruses.  It is generally used as a 10% solution, and is better suited for use on plastic cages, as it can be corrosive to metals, such as stainless steel and aluminum.

Phenols, including Lysol®, are also used as sanitizers.  They are slow-acting, but are effective against the vegetative and spore forms of bacteria.  Phenols should never be used on cat cages and litter pans, however, because they are toxic to cats.

Quaternary ammonias ("quats") are low toxicity chemicals with good detergent action.  Roccal-D® is an example of a quaternary ammonia.

Iodine is a chemical that is in the same class as chlorine, but is less toxic. It is usually used as a detergent scrub or antiseptic for surgical prep and wound cleaning.  Some people, however, are very sensitive to iodine-based antiseptics and soaps, so you should be alert to redness and itching of your skin.  Common names of iodine-based disinfectants are Betadine®, povidine and povidone.

Some small-sized animal facilities may hand wash cages, cage lids and racks and water bottles.  Most facilities, however, have automated equipment, such as cage washers, tunnel washers and bottle washer/fillers.  Robotic systems have been developed that dump soiled bedding, feed the cages through a cage washer and refill the cages with bedding.  Special waste disposal units consist of a hood with negative air flow and a dump stations for emptying cages.  This helps minimize asthmatic and allergic reactions.

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  1. Sterilization:

Sterilization is destruction of all living organisms on an inanimate substrate.  It can be achieved in a number of ways, depending upon the substance to be sterilized, including moist heat, dry heat, ethylene oxide and radiation.

Moist heat sterilization uses steam under pressure to increase the temperature of the steam (water vapor) to above 100° C, water's boiling point.  A special machine, called an autoclave, is used to produce this superheated steam.  The target temperature, pressure and time varies with the substance being sterilized, but in veterinary practice the typical values are 121° C at 15 psi (pounds pressure per square inch) for 15-20 minutes. 

Autoclaving is an effective way to sterilize surgical instruments, although it has a dulling effect on sharp tools such as scalpel blades and scissors.  It is unsuitable for heat-sensitive materials such as plastic catheters and latex gloves.

All sterilizing systems must be evaluated to ensure that they are functioning properly.  The autoclave can be monitored with physical, chemical and biological indicators.  The physical method is evaluation of the temperature and pressure gauges of the autoclave, ensuring that the targets are met.  Chemical indicators include autoclave tape and strips that contain a substance that changes color at a specific temperature.  Chemical indicators do not assess pressure, however, so changes in color do not guarantee sterility.  Biological indicators consist of heat-dwelling bacteria (Bacillus stearothermophilus spores) that are sent through the autoclave cycle and cultured after its completion.  If the proper temperature was attained, the bacteria will not grow.

Dry heat sterilization is accomplished with an oven or an incinerator.  Incinerators are used to destroy contaminated materials.  Ovens provide hot dry heat.  Flash (very quick) units are available, but many ovens require one to two hours of heating to 160° C.

Ethylene oxide (ETO) is a chemical that is used to sterilize many heat-sensitive materials, such as catheters and sutures, or moisture-sensitive materials, such as electronic equipment.  ETO is a carcinogen, a mutagen and is flammable.  In other words, it's a hazardous method to use.  Materials sterilized with ETO must be aired out for several weeks prior to use, to ensure that no residual chemical remains.  Although ethylene oxide is hazardous and the equipment is expensive, it is a reasonable option for a facility that needs to sterilize sensitive materials. 

Radiation can also be used to sterilize heat-sensitive materials.  Nonionizing radiation, such as ultraviolet light, can be used at the entrance to an animal facility or room.  It sterilizes the surface of a substance, such as a lab coat, drinking water or air.  While not extremely dangerous to humans, it can affect vision if you stare at an ultraviolet light for an extended period of time.

Ionizing (ex. gamma) radiation penetrates deeply into a substance, including an operator.  It can be lethal if direct exposure occurs.  Strict safety regulations are imposed on the use of ionizing radiation, and it is primarily used in an industrial setting to batch sterilize catheters and other heat-sensitive materials.

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  1. Vermin Control:

Vermin is any living macro-organism (visible) that should not be present in the facility.  Fleas, ants and wild mice are all vermin. 

There are two primary reasons why vermin should be excluded.  They cause direct injury, such as flea allergy dermatitis.  They can also be vectors for pathogens, introducing disease into an animal room.

The preferred method of vermin control is prevention.  A facility should be designed so that vermin cannot gain entry.  Bedding and food must be kept in vermin-proof containers.  Adherence to sanitation protocols with deprive vermin of food and shelter.

Unfortunately, prevention is not always effective.  The first step in dealing with a vermin problem is to properly identify what species you're dealing with.  Particularly with invertebrates, the method of treatment for one species may be ineffective against another. 

After the problem has been identified, a control procedure must be developed that will not interfere with the experimental protocol. 

  1. Quality Assurance (QA):

QA is the establishment of standards for the animal facility and all of its protocols, including sanitation and vermin control, with the goals of ensuring high quality research and high quality care for the animals.  The Good Laboratory Practices Act (GLP) of the Food and Drug Administration mandates specific QA procedures for any drug experiment.  All animals, facilities and research, however, benefit from quality assurance practices.

Key to quality assurance is the development of monitoring programs for the animals, their environment and infectious organisms.

Isolation and quarantine of newly arrived animals is critical to avoiding the introduction of pathogens into the research facility.  Preventative medicine programs should be used, including vaccinations and parasite treatments.  Only animals of a defined health status should be purchased and every animal must be observed every day. 

A surveillance protocol should be developed that includes routine monitoring of the animals for selected pathogens.  Some facilities use "sentinel" animals--animals that are not on study, but that are exposed to the study animals and that are more sensitive to the pathogen of concern. 

Environmental factors, including light, temperature, humidity and noise can affect the well-being of an animal and may alter its response to an experimental variable.  All possible factors should be standardized for all animals in a study. 

The genetics of the animals should be monitored, especially for inbred strains, so that genetic drift and the inadvertent establishment of a new strain does not occur.  There are a number of different methods used to ensure genetic purity, including mandible measurements, DNA fingerprinting (identification) and tissue analysis.

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08/18/03